- GROUP 17
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Why databases are created and shared?
- Easier for researchers around the world to find info from the database
- To store all the information related to the specific topics
- To improve the human health that related to genome data
- To keep updated on new discovery
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organisation of databases and its major grouping
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Nucleic acid sequence and structure
- dbSUPER
- JuncDB
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Protein sequence and structure
- Pfam
- PANTHER
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Metabolic and signaling pathways
- WikiPathways
- Escherichia coli metabolism database (ECMDB)
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Viruses, bacteria, protozoa and fungi
- Bacterial Diversity (BacDive) databases
- Ensembl Genomes databases
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Genomes of human and model organisms
- Hymenoptera Genome Database
- RefSeq
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Human diseases and drugs
- ClinVar, GWASdb and aHaploReg
- Database of Digenic Diseases (DIDA)
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Plants
- Plant Promoter Analysis Navigator
- Information Commons for Rice (IC4R)
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Mitochondrial databases and databases of chemical compounds
- Carbohydrate Structure Database (CSDB)
- MitoAge
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Numbers available
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1685 databases
- addition of 88 new resources
- removal of 23 obsolete websites
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References
- Rigden, D. J., Fernández-Suárez, X. M., & Galperin, M. Y. (2016). The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection. Nucleic Acids Res Nucleic Acids Research, 44(D1).
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Criteria for selection into NAR databases
- General utility of the database to the scientific community
- Comprehensiveness of the coverage (complete data)
- Degree of value added in the production of database (updated)
- Able to refine the scope of research
- Free accessible
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Why we need to group these databases?
- Save time to search a particular database
- Organization into the specific group make it easier to access
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Why some databases are no longer in the the databases and dropped from it?
- Non-responsive
- Obsolete in entries
- No more effective and valid data in system
- Similar content is available in other database or integrated into other databases