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Factors affecting the rate of enzyme reaction
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Temperature
- Q10 = 2
- Q10 = x + 10 / x
- Optimum temperature = 40
- Inactive at low temperature, denature at high temperature
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pH
- Each kind of enzyme have its own optimum temperature
- pH change --> ionic change on amino acid changes --> bond breaking --> Shape of active site change --> denature
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Enzyme concentration
- Will limited by substrate concentration after certain extent
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Substrate concentration
- Will limited by enzyme concentration after certain extent
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Inhibition
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Reversible inhibitors
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Competitive
- Have similar shape to substrate
- compete with substrate for active site
- Can be solved by increasing substrate concentration
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Non-competitive
- Have different shape with substrate
- Bind to inhibitor site, but loosely
- alter the structure of active site
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Reaction hindered
- Depend on inhibitor concentration and binding affinity of enzyme
- No solution
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Irreversible inhibitors
- Bind irreversibly with enzyme
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End-product inhibition
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Metabolism proceed in small steps
- Prevent vigorous reactions
- Effective use of energy
- intermediates are useful to other metabolic pathways
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Negative feedback inhibition
- End-product will bind with enzyme to regulate the yield of product, as to adjust the metabolic rate to suit the demand
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Applications
- Washing powders
- Meat tenderizers
- Fructose Syrups
- Analytical reagents
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Cofactors
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Non-protein components of enzyme molecules
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Organic compounds
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Firmly bound (prosthetic groups)
- e.g. FAD
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Loosely bound (coenzymes)
- Atom carriers e.g. NADP
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Inorganic compounds (activators)
- e.g. Metal ions
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Mechanism
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Active site
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Have same/similar shape with substrate
- Forming enzyme-substrate complex upon binding
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Lock and key hypothesis
- Highly specific
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Induced-fit hypothesis
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Substrate induce change of shape of enzyme upon binding
- Dynamic interactions
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Properties
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Speed up chemical reactions
- So as called catalyst
- Only small amount is needed
- Reusable since they remain unchanged
- Nature of products are not affected
- Catalyzing both forward and backward reactions equally
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They are globular proteins
- Highly specific
- Affect or denature by extreme conditions (pH, temperature,etc)
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Use in metabolism
- Since they lowered activation energy of reactions