1. Ref. based read mapping
   1. Cloud-Burst: paralled RMAP based
      1. http://bioinformatics.oxfordjournals.org/cgi/content/abstract/25/11/1363
2. PHYLOGENETICS
   1. Many-core algorithms for statistical phylogenetics
      1. http://bioinformatics.oxfordjournals.org/cgi/content/abstract/25/11/1370
3. SEQUENCE ANALYSIS
   1. Bio-Python
      1. http://bioinformatics.oxfordjournals.org/cgi/content/abstract/25/11/1422
   2. Assembly reconcillation
      1. http://www.genome.umd.edu/software.htm
   3. Genome assembly reborn: recent computational challenges